WormBase Schema for Model: Gene
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| ?Gene | Evidence | #Evidence | |||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | UNIQUE | Sequence | UNIQUE | ?Sequence | XREF | Gene_child | ||
| Identity | Version | UNIQUE | Int | ||||||
| Name | CGC_name | UNIQUE | ?Gene_name | XREF | CGC_name_for | #Evidence | |||
| Sequence_name | UNIQUE | ?Gene_name | XREF | Sequence_name_for | |||||
| Molecular_name | ?Gene_name | XREF | Molecular_name_for | ||||||
| Other_name | ?Gene_name | XREF | Other_name_for | #Evidence | |||||
| Public_name | UNIQUE | ?Gene_name | XREF | Public_name_for | |||||
| DB_info | Database | ?Database | ?Database_field | ?Text | |||||
| Species | UNIQUE | ?Species | |||||||
| History | Version_change | Int | UNIQUE | DateType | UNIQUE | ?Person | #Gene_history_action | ||
| Merged_into | UNIQUE | ?Gene | XREF | Acquires_merge | |||||
| Acquires_merge | ?Gene | XREF | Merged_into | ||||||
| Split_from | UNIQUE | ?Gene | XREF | Split_into | |||||
| Split_into | ?Gene | XREF | Split_from | ||||||
| Transposon_in_origin | |||||||||
| Status | UNIQUE | Live | #Evidence | ||||||
| Suppressed | #Evidence | ||||||||
| Dead | #Evidence | ||||||||
| Gene_info | Biotype | UNIQUE | ?SO_term | ||||||
| Gene_class | UNIQUE | ?Gene_class | XREF | Genes | |||||
| Laboratory | ?Laboratory | ||||||||
| Cloned_by | #Evidence | ||||||||
| Reference_allele | ?Variation | #Evidence | |||||||
| Allele | ?Variation | XREF | Gene | #Evidence | |||||
| Possibly_affected_by | ?Variation | XREF | Possibly_affects | #Evidence | |||||
| Legacy_information | Text | #Evidence | |||||||
| Complementation_data | Text | ||||||||
| Strain | ?Strain | XREF | Gene | ||||||
| Component_of_genotype | ?Genotype | XREF | Gene | ||||||
| In_cluster | ?Gene_cluster | XREF | Contains_gene | ||||||
| RNASeq_FPKM | ?Life_stage | Float | #Evidence | ||||||
| GO_term | ?GO_term | XREF | Gene | ?GO_code | #Evidence | ||||
| GO_annotation | ?GO_annotation | XREF | Gene | ||||||
| Contained_in_operon | ?Operon | XREF | Contains_gene | ||||||
| Ortholog | ?Gene | XREF | Ortholog | ?Species | #Evidence | ||||
| Paralog | ?Gene | XREF | Paralog | ?Species | #Evidence | ||||
| Structured_description | Provisional_description | ?Text | #Evidence | ||||||
| Detailed_description | ?Text | #Evidence | |||||||
| Concise_description | ?Text | #Evidence | |||||||
| Other_description | ?Text | #Evidence | |||||||
| Automated_description | ?Text | #Evidence | |||||||
| Sequence_features | ?Text | #Evidence | |||||||
| Functional_pathway | ?Text | #Evidence | |||||||
| Functional_physical_interaction | ?Text | #Evidence | |||||||
| Biological_process | ?Text | #Evidence | |||||||
| Molecular_function | ?Text | #Evidence | |||||||
| Expression | ?Text | #Evidence | |||||||
| Disease_info | Experimental_model | ?DO_term | XREF | Gene_by_biology | ?Species | #Evidence | |||
| Potential_model | ?DO_term | XREF | Gene_by_orthology | ?Species | #Evidence | ||||
| Disease_relevance | ?Text | ?Species | #Evidence | ||||||
| Modifies_disease | ?DO_term | XREF | Disease_modifier_gene | ||||||
| Models_disease_in_annotation | ?Disease_model_annotation | XREF | Disease_relevant_gene | ||||||
| Modifies_disease_in_annotation | ?Disease_model_annotation | XREF | Modifier_gene | ||||||
| Models_disease_asserted | ?Disease_model_annotation | XREF | Asserted_gene | ||||||
| Models_disease_inferred | ?Disease_model_annotation | XREF | Inferred_gene | ||||||
| Molecular_info | Corresponding_CDS | ?CDS | XREF | Gene | #Evidence | ||||
| Corresponding_CDS_history | ?CDS | XREF | Gene_history | ||||||
| Corresponding_transcript | ?Transcript | XREF | Gene | #Evidence | |||||
| Corresponding_transcript_history | ?Transcript | XREF | Gene_history | ||||||
| Corresponding_pseudogene | ?Pseudogene | XREF | Gene | #Evidence | |||||
| Corresponding_pseudogene_history | ?Pseudogene | XREF | Gene_history | ||||||
| Corresponding_transposon | ?Transposon | XREF | Gene | #Evidence | |||||
| Other_sequence | ?Sequence | XREF | Gene | #Evidence | |||||
| Associated_feature | ?Feature | XREF | Associated_with_gene | #Evidence | |||||
| Associated_transcription_factor | ?Transcription_factor | XREF | Associated_with_gene | #Evidence | |||||
| Gene_product_binds | ?Feature | XREF | Bound_by_product_of | ||||||
| Transcription_factor | ?Transcription_factor | XREF | Product_of | ||||||
| Experimental_info | RNAi_result | ?RNAi | XREF | Gene | #Evidence | ||||
| Expr_pattern | ?Expr_pattern | XREF | Gene | ||||||
| Drives_construct | ?Construct | XREF | Driven_by_gene | #Evidence | |||||
| Construct_product | ?Construct | XREF | Gene | #Evidence | |||||
| Regulate_expr_cluster | ?Expression_cluster | XREF | Regulated_by_gene | ||||||
| Antibody | ?Antibody | XREF | Gene | ||||||
| Microarray_results | ?Microarray_results | XREF | Gene | ||||||
| Expression_cluster | ?Expression_cluster | XREF | Gene | #Evidence | |||||
| SAGE_tag | ?SAGE_tag | XREF | Gene | #SAGE_mapping_info | |||||
| 3d_data | ?3d_data | XREF | Gene | ||||||
| Interaction | ?Interaction | ||||||||
| Anatomy_function | ?Anatomy_function | XREF | Gene | ||||||
| Product_binds_matrix | ?Position_Matrix | XREF | Bound_by_gene_product | #Evidence | |||||
| WBProcess | ?WBProcess | XREF | Gene | #Evidence | |||||
| Map_info | Map | UNIQUE | ?Map | XREF | Gene | #Map_position | |||
| Well_ordered | |||||||||
| Hide_under | ?Gene | XREF | Representative_for | ||||||
| Representative_for | ?Gene | XREF | Hide_under | ||||||
| Positive | Inside_rearr | ?Rearrangement | XREF | Gene_inside | #Evidence | ||||
| Positive_clone | ?Clone | XREF | Positive_gene | #Evidence | |||||
| Negative | Outside_rearr | ?Rearrangement | XREF | Gene_outside | #Evidence | ||||
| Negative_clone | ?Clone | XREF | Negative_gene | #Evidence | |||||
| Mapping_data | 2_point | ?2_point_data | |||||||
| Multi_point | ?Multi_pt_data | ||||||||
| Pos_neg_data | ?Pos_neg_data | ||||||||
| Interpolated_map_position | UNIQUE | ?Map | UNIQUE | Float | |||||
| Landmark_gene | |||||||||
| Pseudo_map_position | |||||||||
| Reference | ?Paper | XREF | Gene | #Evidence | |||||
| Picture | ?Picture | XREF | Gene | ||||||
| Remark | ?Text | #Evidence | |||||||
| Method | UNIQUE | ?Method |
