Cellular RNA-directed RNA polymerases (RdRPs) function in development and RNA silencing in many species and in heterochromatin assembly in S. pombe. EGO-1/RdRP is required for fertility and a robust RNAi response in the C. elegans germ line. EGO-1 activity promotes germ cell proliferation, meiotic progression during leptotene/zygotene, and formation of functional gametes. Many cellular processes rely on EGO-1 activity, including heterochromatin assembly and distribution of nuclear pore complexes and P granules. We hypothesize that different aspects of the
ego-1(0) null phenotype reflect roles for EGO-1 in distinct cellular processes. We have focused on describing the role of EGO-1 in heterochromatin assembly. EGO-1 activity is required for methylation of histone H3 on lysine 9 (H3meLys9), a modification associated with transcriptional silencing, on unpaired chromosomes and chromosome fragments in the germ line. EGO-1 activity is not required for all H3meLys9 accumulation in the germ line, since normal accumulation is seen on paired chromosomes and highly repetitive DNA in
ego-1(0) mutants. The latter result is consistent with our earlier finding that EGO-1 is not required for transcriptional silencing of repetitive transgenes. H3meLys9 accumulates normally on unpaired chromosomes in
dcr-1(0) mutants. In other systems, components of the RNAi machinery, including Dicer, function in targeting heterochromatin to repetitive DNA at centromeres. Therefore, EGO-1 activity may target heterochromatin assembly by a mechanism distinct from the classic RNAi-based mechanism that has been described in other systems. Consistent with a role in chromatin regulation,
ego-1 interacts genetically with mutations in other chromatin regulators to disrupt germline development. We propose that EGO-1-mediated heterochromatin assembly may function as a defense against expression of transposons during meiosis/gametogenesis and in the regulation of endogenous gene expression. We used gene expression profiling to identify potential targets of regulation by EGO-1, and have identified sets of genes whose transcript levels are either increased to decreased at least two-fold in
ego-1(0) mutants. Our data suggest that EGO-1 activity promotes a pattern of gene expression that is appropriate for germline function.