Inositol 1,4,5-trisphosphate receptors (IP3Rs) play a central role in the organisation of calcium signals by regulating intracellular calcium flux. IP3Rs in C. elegans are encoded by a single gene,
itr-1 (also called
lfe-1 (1) and
dec-4 (2) ). In previous work (3), we characterised the gene structure in detail and identified three putative transcriptional start sites and three alternative splice sites. Sequence comparisons to the C. briggsae
itr-1 homologue support the hypothesis that the
itr-1 gene has three promoters (pA, pB and pC), each of which gives rise to an alternative mRNA and hence unique protein. The pattern of expression directed by each promoter was determined using GFP reporter gene fusions. pA directs expression in the pharyngeal terminal bulb, the rectal epithelial cells and vulva; pB directs expression in the amphid socket cells, the PDA motor neuron and the spermatheca; pC directs expression in the spermathecal valve, uterine sheath cells, pharyngeal isthmus and intestine (4). Thus tissue-specific expression of
itr-1 variants is directed by three promoters and this results in adjacent cells in the same tissue containing different IP3R isoforms. Analysis of the sequence conversation between promoter A of C. elegans and C. briggsae identified four short regions (pA-A to pA-D) of conservation. Deletion analysis of pA demonstrated that the region containing pA-C is required for expression in the terminal bulb and rectal epithelial cells and the region containing pA-D is required for expression in the vulva. pA-C contains sequences which show homology to binding sites for known C. elegans transcription factors. We are currently identifying factors that regulate the promoter using a yeast one-hybrid screen. 1. Clandinin et al (1998) Cell: 92, 523-533. 2. Dal Santo et al (1999) Cell: 98 757-767. 3. Baylis et al (1999) J. Mol Biol: 294, 467-476. 4. Gower et al (2001) J. Mol Biol: 306, 145-157.