- WBPaper00038168:lin-35_downregulated
For each gene in each microarray hybridization experiment, the ratio of RNA levels from the two samples was transformed into a log2 value and the mean log2 ratio was calculated. The log2 ratios were normalized by print-tip Loess normalization (Dudoit and Yang, 2002). All genes with a false discovery rate of <= 5% (q <= 0.05) (Storey and Tibshirani, 2003) and a mean fold-change ratio of >= 1.5 were selected for further analysis.
Genes that were downregulated in lin-35.
- WBPaper00038168:lin-35_upregulated
For each gene in each microarray hybridization experiment, the ratio of RNA levels from the two samples was transformed into a log2 value and the mean log2 ratio was calculated. The log2 ratios were normalized by print-tip Loess normalization (Dudoit and Yang, 2002). All genes with a false discovery rate of <= 5% (q <= 0.05) (Storey and Tibshirani, 2003) and a mean fold-change ratio of >= 1.5 were selected for further analysis.
Genes that were upregulated in lin-35.
- WBPaper00038168:lin-15B(n744)_downregulated
For each gene in each microarray hybridization experiment, the ratio of RNA levels from the two samples was transformed into a log2 value and the mean log2 ratio was calculated. The log2 ratios were normalized by print-tip Loess normalization (Dudoit and Yang, 2002). All genes with a false discovery rate of <= 5% (q <= 0.05) (Storey and Tibshirani, 2003) and a mean fold-change ratio of >= 1.5 were selected for further analysis.
Genes that were downregulated in lin-15B(n744).
- WBPaper00066652:mab-5(gk670)_downregulated_Q-cell
DESeq2 (version 2.11.40.7) FDR < 0.05, log2 fold change > 1.5 or < -1.5.
Transcripts that showed significantly decreased expression in Q cells isolated from mab-5(gk670) animals, comparing to Q cells isolated from N2 animals.
- WBPaper00066652:mab-5(e1239)_upregulated_Q-cell
DESeq2 (version 2.11.40.7) FDR < 0.05, log2 fold change > 1.5 or < -1.5.
Transcripts that showed significantly increased expression in Q cells isolated from mab-5(e1239) animals, comparing to Q cells isolated from N2 animals.
- WBPaper00038168:lin-15B(n744)_upregulated
For each gene in each microarray hybridization experiment, the ratio of RNA levels from the two samples was transformed into a log2 value and the mean log2 ratio was calculated. The log2 ratios were normalized by print-tip Loess normalization (Dudoit and Yang, 2002). All genes with a false discovery rate of <= 5% (q <= 0.05) (Storey and Tibshirani, 2003) and a mean fold-change ratio of >= 1.5 were selected for further analysis.
Genes that were upregulated in lin-15B(n744).
- WBPaper00066652:mab-5(e1239)_downregulated_Q-cell
DESeq2 (version 2.11.40.7) FDR < 0.05, log2 fold change > 1.5 or < -1.5.
Transcripts that showed significantly decreased expression in Q cells isolated from mab-5(e1239) animals, comparing to Q cells isolated from N2 animals.
- WBPaper00066652:mab-5(gk670)_upregulated_Q-cell
DESeq2 (version 2.11.40.7) FDR < 0.05, log2 fold change > 1.5 or < -1.5.
Transcripts that showed significantly increased expression in Q cells isolated from mab-5(gk670) animals, comparing to Q cells isolated from N2 animals.