WBPaper00034636:heat_shock_upregulated

paired t-tests Genes Showing Significant Expression Changes (P <= 0.05 After FDR) in Heat-Shocked (30 centigrade for 1.5 h; Two Arrays), Compared to Sham Controls (26 centigrade for 2.5 h; Five Arrays).

WBPaper00034636:heat_shock_downregulated

paired t-tests Genes Showing Significant Expression Changes (P <= 0.05 After FDR) in Heat-Shocked (30 centigrade for 1.5 h; Two Arrays), Compared to Sham Controls (26 centigrade for 2.5 h; Five Arrays).

WBPaper00006465:IV_ethanol_late_repression

Class IV genes are down-regulated at 6 h, but not at earlier time points.

WBPaper00065225:nhr-42(tm1375)_upregulated_S.aureus-infected

Adjusted p-value (Padj) <= 0.01 was considered significant for differential gene expression. Transcripts that showed significantly increased expression in nhr-42(tm1375) animals infected with S. aureus SH1000 for 5 h, comparing to in N2 animals infected with S. aureus SH1000 for 5 h.

WBPaper00065225:nhr-42(tm1375)_downregulated_S.aureus-infected

Adjusted p-value (Padj) <= 0.01 was considered significant for differential gene expression. Transcripts that showed significantly decreased expression in nhr-42(tm1375) animals infected with S. aureus SH1000 for 5 h, comparing to in N2 animals infected with S. aureus SH1000 for 5 h.

WBPaper00038168:lin-35_downregulated

For each gene in each microarray hybridization experiment, the ratio of RNA levels from the two samples was transformed into a log2 value and the mean log2 ratio was calculated. The log2 ratios were normalized by print-tip Loess normalization (Dudoit and Yang, 2002). All genes with a false discovery rate of <= 5% (q <= 0.05) (Storey and Tibshirani, 2003) and a mean fold-change ratio of >= 1.5 were selected for further analysis. Genes that were downregulated in lin-35.

WBPaper00047021:MWCNT_upregulated

N.A. Genes that showed significantly increased expression after exposed to multiwall carbon nanotubes (MWCNTs) for 4 and 24 h.

WBPaper00006465:II_ethanol_late_induction

Class II genes are those showing increase in transcript abundance at 6 h, but not at early time points.

WBPaper00047021:MWCNT_downregulated

N.A. Genes that showed significantly decreased expression after exposed to multiwall carbon nanotubes (MWCNTs) for 4 and 24 h.

WBPaper00038168:lin-35_upregulated

For each gene in each microarray hybridization experiment, the ratio of RNA levels from the two samples was transformed into a log2 value and the mean log2 ratio was calculated. The log2 ratios were normalized by print-tip Loess normalization (Dudoit and Yang, 2002). All genes with a false discovery rate of <= 5% (q <= 0.05) (Storey and Tibshirani, 2003) and a mean fold-change ratio of >= 1.5 were selected for further analysis. Genes that were upregulated in lin-35.