WBPaper00059824:rnp-6(dh1127)_regulated_OP50

Differentially expressed genes (DEGs) (q-value <0.05) between different samples were identified using the stringtie version 1.3.0, followed by Cufflinks version 2.2. Transcripts that showed significantly altered expression in rnp-6(dh1127) animals comparing to in N2 when fed with heat killed E. coli OP50.

WBPaper00066652:Q-cell_enriched

DESeq2 (version 2.11.40.7) FDR < 0.05, fold change > 2. Transcripts enriched in Q cell.

WBPaper00066652:mab-5(gk670)_downregulated_Q-cell

DESeq2 (version 2.11.40.7) FDR < 0.05, log2 fold change > 1.5 or < -1.5. Transcripts that showed significantly decreased expression in Q cells isolated from mab-5(gk670) animals, comparing to Q cells isolated from N2 animals.

WBPaper00066652:mab-5(e1239)_upregulated_Q-cell

DESeq2 (version 2.11.40.7) FDR < 0.05, log2 fold change > 1.5 or < -1.5. Transcripts that showed significantly increased expression in Q cells isolated from mab-5(e1239) animals, comparing to Q cells isolated from N2 animals.

WBPaper00066652:Q-cell_depleted

DESeq2 (version 2.11.40.7) FDR < 0.05, fold change > 2. Transcripts depleted in Q cell.

WBPaper00066652:mab-5(e1239)_downregulated_Q-cell

DESeq2 (version 2.11.40.7) FDR < 0.05, log2 fold change > 1.5 or < -1.5. Transcripts that showed significantly decreased expression in Q cells isolated from mab-5(e1239) animals, comparing to Q cells isolated from N2 animals.

WBPaper00066652:mab-5(gk670)_upregulated_Q-cell

DESeq2 (version 2.11.40.7) FDR < 0.05, log2 fold change > 1.5 or < -1.5. Transcripts that showed significantly increased expression in Q cells isolated from mab-5(gk670) animals, comparing to Q cells isolated from N2 animals.

WBPaper00066659:mir-1(n4101)_downregulated

DESeq2, Q value < 0.01. Transcripts that showed significantly decreased expression in mir-1(n4101).

WBPaper00066659:mir-1(n4101)_upregulated

DESeq2, Q value < 0.01. Transcripts that showed significantly increased expression in mir-1(n4101).

WBPaper00052881:B.subtilis-biofilm_downregulated

CuffDiff q-value < 0.05. Transcripts that showed significantly decreased expression after the formation of B. subtilis biofilm