WBPaper00066652:Q-cell_enriched

DESeq2 (version 2.11.40.7) FDR < 0.05, fold change > 2. Transcripts enriched in Q cell.

WBPaper00066652:mab-5(gk670)_downregulated_Q-cell

DESeq2 (version 2.11.40.7) FDR < 0.05, log2 fold change > 1.5 or < -1.5. Transcripts that showed significantly decreased expression in Q cells isolated from mab-5(gk670) animals, comparing to Q cells isolated from N2 animals.

WBPaper00066652:mab-5(e1239)_upregulated_Q-cell

DESeq2 (version 2.11.40.7) FDR < 0.05, log2 fold change > 1.5 or < -1.5. Transcripts that showed significantly increased expression in Q cells isolated from mab-5(e1239) animals, comparing to Q cells isolated from N2 animals.

WBPaper00066652:Q-cell_depleted

DESeq2 (version 2.11.40.7) FDR < 0.05, fold change > 2. Transcripts depleted in Q cell.

WBPaper00066652:mab-5(e1239)_downregulated_Q-cell

DESeq2 (version 2.11.40.7) FDR < 0.05, log2 fold change > 1.5 or < -1.5. Transcripts that showed significantly decreased expression in Q cells isolated from mab-5(e1239) animals, comparing to Q cells isolated from N2 animals.

WBPaper00066652:mab-5(gk670)_upregulated_Q-cell

DESeq2 (version 2.11.40.7) FDR < 0.05, log2 fold change > 1.5 or < -1.5. Transcripts that showed significantly increased expression in Q cells isolated from mab-5(gk670) animals, comparing to Q cells isolated from N2 animals.

WBPaper00066659:mir-1(n4101)_downregulated

DESeq2, Q value < 0.01. Transcripts that showed significantly decreased expression in mir-1(n4101).

WBPaper00066659:mir-1(n4101)_upregulated

DESeq2, Q value < 0.01. Transcripts that showed significantly increased expression in mir-1(n4101).

WBPaper00042477:RSR-2_complex

Percolator (semi-supervised learning machine) was used at constant 0.01% FDR. Percolator assigns a q-value to each spectrum, which is defined as the minimal FDR at which the identification is deemed correct. These q values are estimated using the distribution of scores from decoy database search, and the q-value threshold was set to <0.01 to validate any peptide. Proteins contained in RSR-2 complex, according to immunoprecipitation using anti-RSR-2, and MudPIT, liquid chromatography and mass spectrometry.

WBPaper00053771:up_at_dpy-7(e88)

Authors considered genes differentially expressed if they had a q-value <= 0.05 and a b-value >= 1 or <= -1. Transcripts that showed significantly increased expression in dpy-7(e88) animals comparing to N2 animals.