WBPaper00025099:MA_specific

Differentially-expressed genes in the MA lines.

WBPaper00066703:L.plantarum-pdxH_upregulated

GFold3, logFC < -1 or > 1. Transcripts that showed significantly increased expression in N2 animals fed with L. plantarum with pdxH mutant, comparing to in N2 animals fed with L. plantarum.

WBPaper00066703:L.plantarum-pdxH_downregulated

GFold3, logFC < -1 or > 1. Transcripts that showed significantly decreased expression in N2 animals fed with L. plantarum with pdxH mutant, comparing to in N2 animals fed with L. plantarum.

WBPaper00036123:Atrazine_regulated

t-test, p < 0.05. Genes that showed significant differential expressed between control and 150 mg\/L Atrazine treatment.

WBPaper00036123:Fluoranthene_regulated

t-test, p < 0.05. Genes that showed significant differential expressed between control and 1000 mg\/L Fluoranthene treatment.

WBPaper00036123:Cadmium_regulated

t-test, p < 0.05. Genes that showed significant differential expressed between control and 20 mg\/L Cadmium treatment.

WBPaper00041207:CE_dauer_down

The weight parameters were optimized based on MA-plots such that spike-in controls show their expected fold change values. lmFit function was used to fit a linear model to probe intensities across arrays, and differential expression was calculated by empirical Bayes method using the eBayes function. Control of FDR was employed as correction for multiple testing. Genes dowm regulated in the dauer versus dauer-exit worms.

WBPaper00041207:CE_dauer_up

The weight parameters were optimized based on MA-plots such that spike-in controls show their expected fold change values. lmFit function was used to fit a linear model to probe intensities across arrays, and differential expression was calculated by empirical Bayes method using the eBayes function. Control of FDR was employed as correction for multiple testing. Genes up regulated in the dauer versus dauer-exit worms.

WBPaper00051387:Triclosan_upregulated

Fold change > 2, p-value < 0.05. Transcripts that showed significantly increased expression after 24 hour exposure to 20umol/l Triclosan at L4 larva stage.

WBPaper00051387:Triclosan_downregulated

Fold change > 2, p-value < 0.05. Transcripts that showed significantly decreased expression after 24 hour exposure to 20umol/l Triclosan at L4 larva stage.