WBPaper00050726:OsmoticStress_regulated_NoFood

DESeq(version 1.10.1), FDR < 0.05. Transcripts that showed significantly altered expression with 500 mM salt (NaCl) vs 100 mM salt when no food was present

WBPaper00050726:OsmoticStress_regulated_Food

DESeq(version 1.10.1), FDR < 0.05. Transcripts that showed significantly altered expression with 500 mM salt (NaCl) vs 100 mM salt when food was present

WBPaper00050726:starvation_regulated_HighSalt

DESeq(version 1.10.1), FDR < 0.05. Transcripts that showed significantly altered expression by starvation with 500 mM salt (NaCl)

WBPaper00050726:starvation_regulated_LowSalt

DESeq(version 1.10.1), FDR < 0.05. Transcripts that showed significantly altered expression by starvation with 100 mM salt (NaCl)

WBPaper00064382:auxin_upregulated

edgeR, average of fold change > 2. Transcripts that showed significantly increased expression in animals exposed to 0.5 mM auxin for 8, 24, or 48 hours.

WBPaper00064382:auxin_downregulated

edgeR, average of fold change > 2. Transcripts that showed significantly decreased expression in animals exposed to 0.5 mM auxin for 8, 24, or 48 hours.

WBPaper00050561:indole_10-fold_downregulated

GeneSpringGX 7.3.1 Transcripts that showed more than 10 folds of decreased expression after 12 hours of treatment by 1.0 mM indole in the presence of E. coli BW25113 tnaA mutant cells.

WBPaper00049072:caffeine(30mM)_upregulated

More than two-fold differentially expressed protein spots were analyzed by MALDI-TOF MS. Proteins upregulated in worms grown with 30 mM caffeine, according to 2D-gel and mass spectrometry analysis.

WBPaper00060399:CoCl2_6hr_upregulated_N2

Significant differentially-expressed gene sets were identified using one or two-class SAM. Transcripts that showed significantly increased expression after N2 animals were exposed to 5 mM CoCl2 for 6 hours.

WBPaper00049072:caffeine(30mM)_downregulated

More than two-fold differentially expressed protein spots were analyzed by MALDI-TOF MS. Proteins upregulated in worms grown with 30 mM caffeine, according to 2D-gel and mass spectrometry analysis.