WBPaper00034640:Phosphorylated_protein

Proteins that contain phosphopeptides identified with TiO2 affinity chormatography and high accuracy LTQ-Orbitrap mass spectrometry.

WBPaper00041174:environmental

two-way ANOVA Genes with variation in expression level across conditions (control, 25C, High-pH-Salt, Liquid, infection).

WBPaper00026640:Development_Group_V

N.A. Expression of group V proteins increased steeply after hatching and remained high during the larval through adult stages.

WBPaper00026640:Development_Group_VI

N.A. Group VI members showed a gradual postembryonic increase in expression and were expressed at relatively high levels in later developmental stages.

WBPaper00006465:I_ethanol_rapid_induction

Class I consists of genes whose transcription levels increased rapidly at a very early stage and were maintained at high levels up to 6 h exposure.

WBPaper00041174:genotypic_prime

two-way ANOVA Genes with significant variation in expression level only across genotypes(AB2, CB4856, RC301, CB4857, N2, HC445), but not environments (control, 25C, High-pH-Salt, Liquid, infection).

WBPaper00041174:environmental_prime

two-way ANOVA Genes with significant variation in expression level only across environments(control, 25C, High-pH-Salt, Liquid, infection), but no genotypic variation (AB2, CB4856, RC301, CB4857, N2, HC445).

WBPaper00032528:L3_depleted

To generate the top10 and bottom10 gene sets, authors ranked all genes by mean expression array signal intensity across the three replicates, then took the top and bottom deciles (1,841 genes each) to represent genes with high and low expression. Genes in the bottom 10% of expression level across the triplicate L3 samples. To generate the top10 and bottom10 gene sets, authors ranked all genes by mean expression array signal intensity across the three replicates, then took the top and bottom deciles (1,841 genes each) to represent genes with high and low expression.

WBPaper00032528:L3_enriched

To generate the top10 and bottom10 gene sets, authors ranked all genes by mean expression array signal intensity across the three replicates, then took the top and bottom deciles (1,841 genes each) to represent genes with high and low expression. Genes in the top 10% of expression level across the triplicate L3 samples. To generate the top10 and bottom10 gene sets, authors ranked all genes by mean expression array signal intensity across the three replicates, then took the top and bottom deciles (1,841 genes each) to represent genes with high and low expression.

WBPaper00059735:glucose_downregulated_lpin-1(RNAi)

Differentially expressed genes (fold change > 2 and adjusted p value < 0.05) were identified by using DESeq2 (v.1.22.2). Transcripts that showed significantly decreased expression in lpin-1(RNAi) animals grown on plates with additional 2% high glucose, comparing to lpin-1(RNAi) animals without additional glucose.