- WBPaper00060014:set-2(zr2012)_downregulated
DESeq2 (v2.1.8.3) was used to determine DE genes and to generate principal component and scatter plots. DE genes with FDR < 0.05 were analysed using g:Profiler with Bonferroni correction.
Transcripts that showed significantly decreased expression in set-2(zr2012) animals at embryo stage, comparing to in N2 animals.
- WBPaper00060014:set-2(tm1630)_downregulated
DESeq2 (v2.1.8.3) was used to determine DE genes and to generate principal component and scatter plots. DE genes with FDR < 0.05 were analysed using g:Profiler with Bonferroni correction.
Transcripts that showed significantly decreased expression in set-2(tm1630) animals at embryo stage, comparing to in N2 animals.
- WBPaper00060014:set-2(zr2012)_upregulated
DESeq2 (v2.1.8.3) was used to determine DE genes and to generate principal component and scatter plots. DE genes with FDR < 0.05 were analysed using g:Profiler with Bonferroni correction.
Transcripts that showed significantly increased expression in set-2(zr2012) animals at embryo stage, comparing to in N2 animals.
- WBPaper00060014:set-2(tm1630)_upregulated
DESeq2 (v2.1.8.3) was used to determine DE genes and to generate principal component and scatter plots. DE genes with FDR < 0.05 were analysed using g:Profiler with Bonferroni correction.
Transcripts that showed significantly increased expression in set-2(tm1630) animals at embryo stage, comparing to in N2 animals.
- WBPaper00066703:L.plantarum-pdxH_upregulated
GFold3, logFC < -1 or > 1.
Transcripts that showed significantly increased expression in N2 animals fed with L. plantarum with pdxH mutant, comparing to in N2 animals fed with L. plantarum.
- WBPaper00066703:L.plantarum-pdxH_downregulated
GFold3, logFC < -1 or > 1.
Transcripts that showed significantly decreased expression in N2 animals fed with L. plantarum with pdxH mutant, comparing to in N2 animals fed with L. plantarum.
- WBPaper00029047:atx-3_upregulated
Differentially expressed (DE) genes were selected using a Bayesian approach with a false discovery rate of 0.1%.
Genes that showed significantly increased expression in both atx-3(gk193) and atx-3(tm1689) comparing with N2.
- WBPaper00029047:atx-3_downregulated
Differentially expressed (DE) genes were selected using a Bayesian approach with a false discovery rate of 0.1%.
Genes that showed significantly decreased expression in both atx-3(gk193) and atx-3(tm1689) comparing with N2.