- WBPaper00061424:Diet_MYb131_upregulated
edgeR FDR <= 0.05, fold change >= 4.
Transcripts that showed significantly increased expression after animals were fed by Comamonas sp. 12022 MYb131, comparing to animals fed by OP50.
- WBPaper00061424:Diet_MYb120_upregulated
edgeR FDR <= 0.05, fold change >= 4.
Transcripts that showed significantly increased expression after animals were fed by Chryseobacterium sp. CHNTR56 MYb120, comparing to animals fed by OP50.
- WBPaper00061424:Diet_MYb120_downregulated
edgeR FDR <= 0.05, fold change >= 4.
Transcripts that showed significantly decreased expression after animals were fed by Chryseobacterium sp. CHNTR56 MYb120, comparing to animals fed by OP50.
- WBPaper00040965:lipid-droplet_associated_protein
The search results were filtered with Xcorr versus Charge values of, Xcorr (+2) > 2.5, and Xcorr (+3) > 3.5. Two times peptide FDR: FDR1 = 0.434%, FDR2 = 0.426%. peptide mass accuracy < 5ppm, SP score > 500, RSp < 5. distinct peptides >= 2, misscleavages 2.
Proteins associated with lipid droplets, according to proteomics study.
- WBPaper00040965:top50_lipid-droplet_associated_protein
The search results were filtered with Xcorr versus Charge values of, Xcorr (+2) > 2.5, and Xcorr (+3) > 3.5. Two times peptide FDR: FDR1 = 0.434%, FDR2 = 0.426%. peptide mass accuracy < 5ppm, SP score > 500, RSp < 5. distinct peptides >= 2, misscleavages 2.
Top 50 proteins associated with lipid droplets, according to proteomics study.
- WBPaper00033444:BacteriaDiet_regulated
Data was analyzed using SAS statistical software (SAS Institute Inc., Cary, North Carolina, USA) using a two-step mixed model analysis of variance to account for all possible sources of variance. This two-step ANOVA was performed using the MIXED procedure in SAS.
Significantly differentially expressed genes after different bacteria treatment. Transcriptional responses of wild-type C. elegans adults were assayed after growth on each of the four bacteria - E. coli, M. luteus, Pseudomonas sp., or B. megaterium. These genes were differentially expressed and statistically significant with multiple testing correction (q < 0.01) across all pair-wise comparisons.